Highlights
- •Two concurrent chromothripsis events occurred in a patient with AML-MRC at onset.
- •We found TP53 impairment, known as promoting chromothripsis.
- •Chromothripsis and stepwise alterations concurred towards patient's poor outcome.
- •Genes involved in both aberration types showed altered expression in the patient.
Abstract
Acute myeloid leukemia with myelodysplasia-related changes (AML-MRC) is a heterogeneous
hematological disorder defined by morphological, genetic, and clinical features. Patients
with AML-MRC often show cytogenetic changes, which are associated with poor prognosis.
Straightforward criteria for AML-MRC diagnosis and a more rigorous characterization
of the genetic abnormalities accompanying this disease are needed. Here we describe
an informative AML-MRC case, showing two separate, but concurrent, chromothripsis
events, occurred at the onset of the tumor, and originating an unbalanced t(5;7) translocation
and a derivative chromosome 12 with a highly rearranged short arm. Conversely, despite
chromothripsis has been often associated with genomic amplification in cancer, in
this case a large marker chromosome harboring amplified sequences from chromosomes
19 and 22 arose from a stepwise mechanism. Notably, the patient also showed a TP53 mutated status, known to be associated with an increased susceptibility towards chromothripsis
and a poor prognosis. Our results indicate that multiple chromothripsis events may
occur early in neoplastic transformation and act in a synergistic way with progressive
chromosomal alterations to determine a dramatic impact on disease outcome, as suggested
by the gene expression profile analysis.
Keywords
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References
- The 2016 revision to the world health organization classification of myeloid neoplasms and acute leukemia.Blood. 2016; 127: 2391-2405https://doi.org/10.1182/blood-2016-03-643544
- Acute myeloid leukemia with myelodysplasia-related changes.Am J Clin Pathol. 2015; 144: 29-43https://doi.org/10.1309/AJCP58RSMFRHLHHH
- Chromothripsis in acute myeloid leukemia: biological features and impact on survival.Leukemia. 2018; 32: 1609-1620https://doi.org/10.1038/s41375-018-0035-y
- Chromothripsis is linked to TP53 alteration, cell cycle impairment, and dismal outcome in acute myeloid leukemia with complex karyotype.Haematologica. 2018; 103: e17-e20https://doi.org/10.3324/haematol.2017.180497
- Marker chromosomes can arise from chromothripsis and predict adverse prognosis in acute myeloid leukemia.Blood. 2017; 129: 1333-1342https://doi.org/10.1182/blood-2016-09-738161
- Genome sequencing of pediatric medulloblastoma links catastrophic DNA rearrangements with TP53 mutations.Cell. 2012; 148: 59-71https://doi.org/10.1016/j.cell.2011.12.013
- MYC-containing double minutes in hematologic malignancies: evidence in favor of the episome model and exclusion of MYC as the target gene.Hum Mol Genet. 2006; 15: 933-942https://doi.org/10.1093/hmg/ddl010
- The hidden genomic and transcriptomic plasticity of giant marker chromosomes in cancer.Genetics. 2018; 208: 951-961https://doi.org/10.1534/genetics.117.300552
- DELLY: structural variant discovery by integrated paired-end and split-read analysis.Bioinformatics. 2012; 28 (i333-i9)https://doi.org/10.1093/bioinformatics/bts378
- Criteria for inference of chromothripsis in cancer genomes.Cell. 2013; 152: 1226-1236https://doi.org/10.1016/j.cell.2013.02.023
A LA, Tolomeo D, Cifola I, Severgnini M, Turchiano A, Augello B, Squeo G, P D.A. MYC-containing amplicons in acute myeloid leukemia: genomic structures, evolution, and transcriptional consequences. 2018;32:2152–66. doi:10.1038/s41375-018-0177-y.
- A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff: sNPs in the genome of drosophila melanogaster strain w1118; iso-2; iso-3.Fly (Austin). 2012; 6: 80-92https://doi.org/10.4161/fly.19695
- COSMIC: exploring the world's knowledge of somatic mutations in human cancer.Nucl Acids Res. 2015; 43: D805-D811https://doi.org/10.1093/nar/gku1075
- Predicting the functional, molecular, and phenotypic consequences of amino acid substitutions using hidden markov models.Hum Mutat. 2013; 34: 57-65https://doi.org/10.1002/humu.22225
- p53, K-ras, c-kit and beta-catenin gene mutations in sinonasal NK/T-cell lymphoma in korea and japan.Oncol Rep. 2005; 13: 265-271https://doi.org/10.3892/or.13.2.265
- Spectrum and prognostic relevance of driver gene mutations in acute myeloid leukemia.Blood. 2016; 128: 686-698https://doi.org/10.1182/blood-2016-01-693879
- CD177: a member of the Ly-6 gene superfamily involved with neutrophil proliferation and polycythemia vera.J Transl Med. 2004; 2: 8https://doi.org/10.1186/1479-5876-2-8
- Identification of the CD33-related SIGLEC receptor, Siglec-5 (CD170), as a useful marker in both normal myelopoiesis and acute myeloid leukaemias.Br J Haematol. 2003; 123: 420-430https://doi.org/10.1046/j.1365-2141.2003.04625.x
- The role of oxysterol-binding protein and its related proteins in cancer.Semin Cell Dev Biol. 2018; 81: 149-153https://doi.org/10.1016/j.semcdb.2017.07.017
- Overexpression of MN1 confers resistance to chemotherapy, accelerates leukemia onset, and suppresses p53 and bim induction.PLoS ONE. 2012; 7: e43185https://doi.org/10.1371/journal.pone.0043185
- Recurrent genetic defects on chromosome 5q in myeloid neoplasms.Oncotarget. 2017; 8: 6483-6495https://doi.org/10.18632/oncotarget.14130
- Hdac3 is essential for the maintenance of chromatin structure and genome stability.Cancer Cell. 2010; 18: 436-447https://doi.org/10.1016/j.ccr.2010.10.022
- CUX1 is a haploinsufficient tumor suppressor gene on chromosome 7 frequently inactivated in acute myeloid leukemia.Blood. 2013; 121: 975-983https://doi.org/10.1182/blood-2012-04-426965
- Epigenetic regulation by lysine demethylase 5 (KDM5) enzymes in cancer.Cancers (Basel). 2011; 3: 1383-1404https://doi.org/10.3390/cancers3011383
Article Info
Publication History
Published online: June 12, 2019
Accepted:
June 11,
2019
Received in revised form:
May 30,
2019
Received:
March 30,
2019
Identification
Copyright
© 2019 Elsevier Inc. All rights reserved.